|
View: |
Part 1: Document Description
|
|
Citation |
|
|---|---|
|
Title: |
Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants |
|
Identification Number: |
doi:10.60483/UNAB/AAZZ4O |
|
Distributor: |
Repositorio de Datos de Investigación - Universidad Andrés Bello (Chile) |
|
Date of Distribution: |
2023-07-12 |
|
Version: |
1 |
|
Bibliographic Citation: |
Fuenzalida-Valdivia, Isabel; Gangas, María Victoria; Zavala, Diego; Herrera-Vásquez, Ariel; Roux, Fabrice; Meneses, Claudio; Blanco-Herrera, Francisca, 2023, "Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants", https://doi.org/10.60483/UNAB/AAZZ4O, Repositorio de Datos de Investigación - Universidad Andrés Bello (Chile), V1, UNF:6:RYUfRW+D8YZueQe40XeNZg== [fileUNF] |
|
Citation |
|
|
Title: |
Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants |
|
Identification Number: |
doi:10.60483/UNAB/AAZZ4O |
|
Authoring Entity: |
Fuenzalida-Valdivia, Isabel (Universidad Andres Bello) |
|
Gangas, María Victoria (Universidad Andres Bello) |
|
|
Zavala, Diego (Universidad Andres Bello) |
|
|
Herrera-Vásquez, Ariel (Universidad Andres Bello) |
|
|
Roux, Fabrice (Universidad de Toulouse) |
|
|
Meneses, Claudio (Pontificia Universidad Católica de Chile) |
|
|
Blanco-Herrera, Francisca (Universidad Andres Bello) |
|
|
Distributor: |
Repositorio de Datos de Investigación - Universidad Andrés Bello (Chile) |
|
Access Authority: |
Fuenzalida-Valdivia, Isabel |
|
Depositor: |
Pardo, Paula |
|
Date of Deposit: |
2023-07-12 |
|
Holdings Information: |
https://doi.org/10.60483/UNAB/AAZZ4O |
|
Study Scope |
|
|
Keywords: |
Medicine, Health and Life Sciences, Psy RAYR-BL, Assembly, Genomics, Arabidopsis thaliana, Gram-negative bacterium, Plant-pathogen interaction |
|
Abstract: |
Here, we report the genome sequence of the P. syringae strain RAYR-BL, isolated from natural accessions of Arabidopsis plants. The draft genome sequence consists of 5.85 Mbp assembled in 110 contigs. The study of P. syringae RAYR-BL is a valuable tool to investigate molecular features of plant-pathogen interaction under environmental conditions. <a href="https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&page_size=10&acc=SRR15318771&display=download">Genome assembly can be downloaded</a> |
|
Methodology and Processing |
|
|
Sources Statement |
|
|
Data Access |
|
|
Other Study Description Materials |
|
|
Related Publications |
|
|
Citation |
|
|
Identification Number: |
https://doi.org/10.1128/mra.01001-21 |
|
Bibliographic Citation: |
Isabel, F.-V., Victoria, G. M., Diego, Z., Ariel, H.-V., Fabrice, R., Claudio, M., & Francisca, B.-H. (2022). Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants. Microbiology Resource Announcements, 11(1), e01001-21 |
|
File Description--f16 |
|
|
File: PsyRAYR-BL_Assembly_Annotation_tables.tab |
|
|
|
|
Notes: |
UNF:6:RYUfRW+D8YZueQe40XeNZg== |
|
List of Variables: | |
|
Variables |
|
|
AnnotationresultsofPsyRAYR-BLgenomewithProkka,EggNogMapperandKAASanalysis. |
|
|
f16 Location: |
Variable Format: character Notes: UNF:6:fShjABTdAhHu6BlAfdo1Ug== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:0oEd+YwM1bXjjR2SN4UJHA== |
|
f16 Location: |
Summary Statistics: Max. NaN; Valid 0.0; Min. NaN; StDev NaN; Mean NaN; Variable Format: numeric Notes: UNF:6:fAAgHxchUGS2H/QsaAId9g== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:skFGH4/i6tpxQ7BwyXZQ4A== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:eD6JU6lb9YxPH9j3+OrXQA== |
|
f16 Location: |
Summary Statistics: Max. NaN; Mean NaN; Valid 0.0; Min. NaN; StDev NaN Variable Format: numeric Notes: UNF:6:fAAgHxchUGS2H/QsaAId9g== |
|
f16 Location: |
Summary Statistics: StDev NaN; Max. NaN; Valid 0.0; Min. NaN; Mean NaN Variable Format: numeric Notes: UNF:6:fAAgHxchUGS2H/QsaAId9g== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:hDdY+mTajcRsq78f02vYYw== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:FT9cBHxj8eGI8/z6PqT2bA== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:6wKJa3auJjtWQ3EMkT7E5Q== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:bS8FvGtVdsZvCNnPvBaDtg== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:60Kpd78QFV4FrlXc8EcP4w== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:2mrSS6eltxwYrGrGy8dmvg== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:VkdQxhlpT5TbGYVOQM+/sQ== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:bKj5/gN/e7mZujiwFUZPQg== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:vK17CNfk5bYCvs4TYWEu/A== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:sxy6AvLglFe+4Wbzb/AsVA== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:aUEX+r1YcOt/OWzX2+qYKA== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:NwcTQL9UDa7VgOPUprnNlA== |
|
f16 Location: |
Variable Format: character Notes: UNF:6:cNikssFjJg1oE6t6cvepkg== |
|
Label: |
PsyRAYR-BL_Assembly.fna |
|
Text: |
Ensamble del genoma de P. syringae RAYR-BL aislada de accesiones naturales de la planta Arabidopsis thaliana |
|
Notes: |
application/octet-stream |
|
Label: |
PsyRAYR-BL_Assembly_Visualization.tif |
|
Text: |
Mapa de genoma circular de Psy RAYR-BL creado con CGView. Desde el anillo más externo: (1) Potenciales factores de virulencia seleccionados con la herramienta VFAnalyzer de VFDB y buscados con MultigeneBlast, (2) CDS en la hebra directa coloreados según la categoría COG, (3) CDS, tRNA y rRNA, (4) CDS, tRNA y rRNA, (5) CDS en la hebra inversa coloreados según la categoría COG, (6) Potenciales factores de virulencia seleccionados con la herramienta VFAnalyzer de VFDB y buscados con MultigeneBlast, (7) contenido de GC, (8) asimetría de GC y (9) Posición del genoma en Mbp con los límites de los contigs coloreados en cian claro y oscuro. |
|
Notes: |
image/tiff |